Publications

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2024

Wang, Zihui; Jiang, Yuan; Diallo, Abdoulaye Baniré; Kembel, Steven W.

Deep learning‐ and image processing‐based methods for automatic estimation of leaf herbivore damage Article de journal

Dans: Methods in Ecology and Evolution, vol. 15, no 4, p. 732–743, 2024, ISSN: 2041-210X, 2041-210X.

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E, McClymont; A, Larouche; Hc, Cote; Ab, Diallo; C, Elwood; F, Kakkar; D, Money; L, Sauve; H, Soudeyns; S, Gantt; I, Boucoiran

Maternal Cytomegalovirus Reinfection during Pregnancy among Women Living with HIV Article de journal

Dans: American Journal of Obstetrics and Gynecology, vol. 230, no 2, p. S641, 2024, ISSN: 00029378.

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Diallo, Abdoulaye

Inference of insertion and deletion scenarios for ancestral genome reconstruction and phylogenetic analyses: algorithms and biological applications Thèse

2024.

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Lebatteux, Dylan; Soudeyns, Hugo; Boucoiran, Isabelle; Gantt, Soren; Diallo, Abdoulaye Baniré

Machine learning-based approach KEVOLVE efficiently identifies SARS-CoV-2 variant-specific genomic signatures Article de journal

Dans: PLOS ONE, vol. 19, no 1, p. e0296627, 2024, ISSN: 1932-6203.

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2023

Mrabah, Nairouz; Amar, Mohamed Mahmoud; Bouguessa, Mohamed; Diallo, Abdoulaye Banire

Toward Convex Manifolds: A Geometric Perspective for Deep Graph Clustering of Single-cell RNA-seq Data Article d’actes

Dans: Proceedings of the Thirty-Second International Joint Conference on Artificial Intelligence, p. 4855–4863, International Joint Conferences on Artificial Intelligence Organization, Macau, SAR China, 2023, ISBN: 9781956792034.

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Mrabah, Nairouz; Amar, Mohamed Mahmoud; Bouguessa, Mohamed; Diallo, Abdoulaye Banire

Exploring the Interaction between Local and Global Latent Configurations for Clustering Single-Cell RNA-Seq: A Unified Perspective Article de journal

Dans: Proceedings of the AAAI Conference on Artificial Intelligence, vol. 37, no 8, p. 9235–9242, 2023, ISSN: 2374-3468, 2159-5399.

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E, McClymont; A, Albert; H, Côté; A, Diallo; C, Elwood; F, Kakkar; D, Money; L, Sauvé; H, Soudeyns; S, Gantt; Boucoiran, I.

Maternal and infant cytomegalovirus detection among women living with HIV Article de journal

Dans: American Journal of Obstetrics and Gynecology, vol. 228, no 2, p. S771–S772, 2023, ISSN: 00029378.

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Wu, Chao-Jung; Liu, Hui-Wen; Tereshko, Lauren; Lin, Dongdong; Bergelson, Svetlana; Zhang, Baohong; Diallo, Abdoulaye Baniré; Mason, Cullen

Assessing functional impurities in rAAV production platforms by long-read sequencing Article de journal

Dans: 2023.

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Ibnatta, Youssef; Khaldoun, Mohammed; Sadik, Mohammed; Essaid, Sabir; Diallo, Abdoulaye Baniré

Mobile Localization for Indoor Iot Services: From Proof of Concept to Real-Word Experimentation Divers

2023.

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Ahmad, Syed Mudasir; Donato, Marcos De; Bhat, Basharat Ahmad; Diallo, Abdoulaye Banire; Peters, Sunday O.

Editorial: Omics technologies in livestock improvement: From selection to breeding decisions Article de journal

Dans: Frontiers in Genetics, vol. 13, p. 1113417, 2023, ISSN: 1664-8021.

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Naghashi, Vahid; Dallago, Gabriel; Diallo, Abdoulaye Banire; Boukadoum, Mounir

Univariate and multivariate time-series methods to forecast dairy income Article d’actes

Dans: 2023.

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Remita, Amine M.; Vitae, Golrokh; Diallo, Abdoulaye Baniré

Prior Density Learning in Variational Bayesian Phylogenetic Parameters Inference Article d’actes

Dans: Jahn, Katharina; Vinař, Tomáš (Ed.): Comparative Genomics, p. 112–130, Springer Nature Switzerland, Cham, 2023, ISBN: 9783031369117.

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Jacques, Amanda A. Boatswain; Diallo, Abdoulaye Baniré; Lord, Etienne

The Canadian Cropland Dataset: A New Land Cover Dataset for Multitemporal Deep Learning Classification in Agriculture Article de journal

Dans: 2023, (arXiv:2306.00114 [cs]).

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Jacques, Amanda A. Boatswain; Diallo, Abdoulaye Baniré; Lord, Etienne

The Canadian Cropland Dataset: A New Land Cover Dataset for Multitemporal Deep Learning Classification in Agriculture Article de journal

Dans: 2023.

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2022

Lebatteux, Dylan; Soudeyns, Hugo; Boucoiran, Isabelle; Gantt, Soren; Diallo, Abdoulaye Banire

KANALYZER: a method to identify variations of discriminative k-mers in genomic sequences Article d’actes

Dans: 2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), p. 757–762, IEEE, Las Vegas, NV, USA, 2022, ISBN: 9781665468190.

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Shahzad, Kashif; Kausar, Ayesha; Manzoor, Saima; Rakha, Sobia A.; Uzair, Ambreen; Sajid, Muhammad; Arif, Afsheen; Khan, Abdul Faheem; Diallo, Abdoulaye; Ahmad, Ishaq

Views on Radiation Shielding Efficiency of Polymeric Composites/Nanocomposites and Multi-Layered Materials: Current State and Advancements Article de journal

Dans: Radiation, vol. 3, no 1, p. 1–20, 2022, ISSN: 2673-592X.

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Remita, Amine M.; Diallo, Abdoulaye Baniré

EvoVGM: a deep variational generative model for evolutionary parameter estimation Article d’actes

Dans: Proceedings of the 13th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics, p. 1–10, Association for Computing Machinery, New York, NY, USA, 2022, ISBN: 9781450393867.

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Almeida, Hayda; Tsang, Adrian; Diallo, Abdoulaye Baniré

Improving candidate Biosynthetic Gene Clusters in fungi through reinforcement learning Article de journal

Dans: Bioinformatics, vol. 38, no 16, p. 3984–3991, 2022, ISSN: 1367-4803, 1367-4811.

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Yauy, Kevin; Lecoquierre, François; Baert-Desurmont, Stéphanie; Trost, Detlef; Boughalem, Aicha; Luscan, Armelle; Costa, Jean-Marc; Geromel, Vanna; Raymond, Laure; Richard, Pascale; Coutant, Sophie; Broutin, Mélanie; Lanos, Raphael; Fort, Quentin; Cackowski, Stenzel; Testard, Quentin; Diallo, Abdoulaye; Soirat, Nicolas; Holder, Jean-Marc; Duforet-Frebourg, Nicolas; Bouge, Anne-Laure; Beaumeunier, Sacha; Bertrand, Denis; Audoux, Jerome; Genevieve, David; Mesnard, Laurent; Nicolas, Gael; Thevenon, Julien; Philippe, Nicolas

Genome Alert!: A standardized procedure for genomic variant reinterpretation and automated gene–phenotype reassessment in clinical routine Article de journal

Dans: Genetics in Medicine, vol. 24, no 6, p. 1316–1327, 2022, ISSN: 10983600.

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Jenna, Sarah; Lemaçon, Audrey; Dehghani, Mehrnoush; Renaut, Sébastien; Diallo, Abdoulaye Baniré

Inference of sample-specific genetic interactions to increase accuracy of indication prioritization in oncology clinical trials and facilitate exploration of combined therapy opportunities. Article de journal

Dans: Journal of Clinical Oncology, vol. 40, no 16_suppl, p. 3123–3123, 2022, ISSN: 0732-183X, 1527-7755.

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Jenna, Sarah; Boucher, Benjamin; Dudragne, Liebaut; Diallo, Abdoulaye Baniré

Abstract 6375: Augmented intelligence to define drug targets associated with triple negative breast cancer (TNBC) metabolic reprogramming Article de journal

Dans: Cancer Research, vol. 82, no 12_Supplement, p. 6375–6375, 2022, ISSN: 1538-7445.

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Naghashi, Vahid; Diallo, Abdoulaye Banire

A Model for the Prediction of Lifetime Profit Estimate of Dairy Cattle (Student Abstract) Article de journal

Dans: Proceedings of the AAAI Conference on Artificial Intelligence, vol. 36, no 11, p. 13021–13022, 2022, ISSN: 2374-3468.

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Martin, Tomas; Fuentes, Victor; Valtchev, Petko; Diallo, Abdoulaye Baniré; Lacroix, René

Generalized graph pattern discovery in linked data with data properties and a domain ontology Article d’actes

Dans: Proceedings of the 37th ACM/SIGAPP Symposium on Applied Computing, p. 1890–1899, ACM, Virtual Event, 2022, ISBN: 9781450387132.

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Conference, ICAR Annual

Sharing solutions on digital transformation, animal welfare and environmental sustainability to support global food security proceedings of the 45th ICAR Annual Conference held in Montreal, CA, 30 May – 3 June 2022 Ouvrage

ICAR, Utrecht, 2022, ISBN: 9789295014220, (OCLC: 1356312312).

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Nguyen, Dung; Boc, Alix; Diallo, Abdoulaye Banire; Makarenkov, Vladimir

Etude de classification des bacteriophages Article de journal

Dans: 2022.

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2021

Lebatteux, Dylan; Diallo, Abdoulaye Banire

Combining a genetic algorithm and ensemble method to improve the classification of viruses Article d’actes

Dans: 2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), p. 688–693, IEEE, Houston, TX, USA, 2021, ISBN: 9781665401265.

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Adelani, David Ifeoluwa; Abbott, Jade; Neubig, Graham; D’souza, Daniel; Kreutzer, Julia; Lignos, Constantine; Palen-Michel, Chester; Buzaaba, Happy; Rijhwani, Shruti; Ruder, Sebastian; Mayhew, Stephen; Azime, Israel Abebe; Muhammad, Shamsuddeen; Emezue, Chris Chinenye; Nakatumba-Nabende, Joyce; Ogayo, Perez; Aremu, Anuoluwapo; Gitau, Catherine; Mbaye, Derguene; Alabi, Jesujoba; Yimam, Seid Muhie; Gwadabe, Tajuddeen; Ezeani, Ignatius; Niyongabo, Rubungo Andre; Mukiibi, Jonathan; Otiende, Verrah; Orife, Iroro; David, Davis; Ngom, Samba; Adewumi, Tosin; Rayson, Paul; Adeyemi, Mofetoluwa; Muriuki, Gerald; Anebi, Emmanuel; Chukwuneke, Chiamaka; Odu, Nkiruka; Wairagala, Eric Peter; Oyerinde, Samuel; Siro, Clemencia; Bateesa, Tobius Saul; Oloyede, Temilola; Wambui, Yvonne; Akinode, Victor; Nabagereka, Deborah; Katusiime, Maurice; Awokoya, Ayodele; MBOUP, Mouhamadane; Gebreyohannes, Dibora; Tilaye, Henok; Nwaike, Kelechi; Wolde, Degaga; Faye, Abdoulaye; Sibanda, Blessing; Ahia, Orevaoghene; Dossou, Bonaventure F. P.; Ogueji, Kelechi; DIOP, Thierno Ibrahima; Diallo, Abdoulaye; Akinfaderin, Adewale; Marengereke, Tendai; Osei, Salomey

MasakhaNER: Named Entity Recognition for African Languages Divers

2021, (arXiv:2103.11811 [cs]).

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Diallo, A.; Tandjigora, N.; Ndiaye, S.; Jan, Tariq; Ahmad, I.; Maaza, M.

Green synthesis of single phase hausmannite Mn3O4 nanoparticles via Aspalathus linearis natural extract Article de journal

Dans: SN Applied Sciences, vol. 3, no 5, p. 562, 2021, ISSN: 2523-3963, 2523-3971.

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Karoui, Yasmine; Jacques, Amanda A. Boatswain; Diallo, Abdoulaye Baniré; Shepley, Elise; Vasseur, Elsa

A Deep Learning Framework for Improving Lameness Identification in Dairy Cattle Article de journal

Dans: Proceedings of the AAAI Conference on Artificial Intelligence, vol. 35, no 18, p. 15811–15812, 2021, ISSN: 2374-3468, 2159-5399.

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Amin, Atia B.; Dubois, Georges Octave; Thurel, Sephora; Danyluk, Jean; Boukadoum, Mounir; Diallo, Abdoulaye Banire

Wireless Sensor Network and Irrigation System to Monitor Wheat Growth under Drought Stress Article d’actes

Dans: 2021 IEEE International Symposium on Circuits and Systems (ISCAS), p. 1–4, IEEE, Daegu, Korea, 2021, ISBN: 9781728192017.

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Martin, Tomas; Fuentes, Victor; Valtchev, Petko; Diallo, Abdoulaye Baniré; Lacroix, René; Boukadoum, Mounir; Leduc, Maxime

Graph pattern mining on top of a domain ontology – preliminary results from a dairy production application Article de journal

Dans: Procedia Computer Science, vol. 192, p. 1227–1236, 2021, ISSN: 18770509.

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Uthamacumaran, Abicumaran; Suarez, Narjara Gonzalez; Diallo, Abdoulaye Baniré; Annabi, Borhane

Computational Methods for Structure-to-Function Analysis of Diet-Derived Catechins-Mediated Targeting of In Vitro Vasculogenic Mimicry Article de journal

Dans: Cancer Informatics, vol. 20, p. 117693512110092, 2021, ISSN: 1176-9351, 1176-9351.

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Martin, Tomas; Fuentes, Victor; Valtchev, Petko; Diallo, Abdoulaye Baniré; Lacroix, René; Leduc, Maxime; Boukadoum, Mounir

Towards Mining Generalized Patterns from RDF Data and a Domain Ontology Section de livre

Dans: Kamp, Michael; Koprinska, Irena; Bibal, Adrien; Bouadi, Tassadit; Frénay, Benoît; Galárraga, Luis; Oramas, José; Adilova, Linara; Krishnamurthy, Yamuna; Kang, Bo; Largeron, Christine; Lijffijt, Jefrey; Viard, Tiphaine; Welke, Pascal; Ruocco, Massimiliano; Aune, Erlend; Gallicchio, Claudio; Schiele, Gregor; Pernkopf, Franz; Blott, Michaela; Fröning, Holger; Schindler, Günther; Guidotti, Riccardo; Monreale, Anna; Rinzivillo, Salvatore; Biecek, Przemyslaw; Ntoutsi, Eirini; Pechenizkiy, Mykola; Rosenhahn, Bodo; Buckley, Christopher; Cialfi, Daniela; Lanillos, Pablo; Ramstead, Maxwell; Verbelen, Tim; Ferreira, Pedro M.; Andresini, Giuseppina; Malerba, Donato; Medeiros, Ibéria; Fournier-Viger, Philippe; Nawaz, M. Saqib; Ventura, Sebastian; Sun, Meng; Zhou, Min; Bitetta, Valerio; Bordino, Ilaria; Ferretti, Andrea; Gullo, Francesco; Ponti, Giovanni; Severini, Lorenzo; Ribeiro, Rita; Gama, João; Gavaldà, Ricard; Cooper, Lee; Ghazaleh, Naghmeh; Richiardi, Jonas; Roqueiro, Damian; Miranda, Diego Saldana; Sechidis, Konstantinos; Graça, Guilherme (Ed.): Machine Learning and Principles and Practice of Knowledge Discovery in Databases, vol. 1524, p. 268–278, Springer International Publishing, Cham, 2021, ISBN: 9783030937355 9783030937362.

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2020

Almeida, Hayda; Palys, Sylvester; Tsang, Adrian; Diallo, Abdoulaye Baniré

TOUCAN: a framework for fungal biosynthetic gene cluster discovery Article de journal

Dans: NAR Genomics and Bioinformatics, vol. 2, no 4, p. lqaa098, 2020, ISSN: 2631-9268.

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Frasco, Charlotte; Radmacher, Maxime; Lacroix, René; Cue, Roger; Valtchev, Petko; Robert, Claude; Boukadoum, Mounir; Sirard, Marc-André; Diallo, Abdoulaye

Towards an Effective Decision-making System based on Cow Profitability using Deep Learning: Article d’actes

Dans: Proceedings of the 12th International Conference on Agents and Artificial Intelligence, p. 949–958, SCITEPRESS – Science and Technology Publications, Valletta, Malta, 2020, ISBN: 9789897583957.

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2019

Remita, Amine M.; Diallo, Abdoulaye Banire

Statistical Linear Models in Virus Genomic Alignment-free Classification: Application to Hepatitis C Viruses Article d’actes

Dans: 2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), p. 474–481, IEEE, San Diego, CA, USA, 2019, ISBN: 9781728118673.

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Almeida, Hayda; Tsang, Adrian; Diallo, Abdoulaye Banire

Supporting supervised learning in fungal Biosynthetic Gene Cluster discovery: new benchmark datasets Article d’actes

Dans: 2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), p. 1280–1287, IEEE, San Diego, CA, USA, 2019, ISBN: 9781728118673.

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Wu, Chao-Jung; Remita, Amine M.; Diallo, Abdoulaye Baniré

MirLibSpark: A Scalable NGS Plant MicroRNA Prediction Pipeline for Multi-Library Functional Annotation Article d’actes

Dans: Proceedings of the 10th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics, p. 669–674, ACM, Niagara Falls NY USA, 2019, ISBN: 9781450366663.

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Vitae, Golrokh; Remita, Amine M.; Diallo, Abdoulaye Baniré

Revisiting the landscape of evolutionary breakpoints across human genome using multi-way comparison Divers

2019.

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Lebatteux, Dylan; Remita, Amine M.; Diallo, Abdoulaye Baniré

Toward an Alignment-Free Method for Feature Extraction and Accurate Classification of Viral Sequences Article de journal

Dans: Journal of Computational Biology, vol. 26, no 6, p. 519–535, 2019, ISSN: 1557-8666.

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Diallo, Abdoulaye Baniré; Nguifo, Engelbert Mephu; Dhifli, Wajdi; Azizi, Elham; Prabhakaran, Sandhya; Tansey, Wesley

Selected Papers from the Workshop on Computational Biology: Joint with the International Joint Conference on Artificial Intelligence and the International Conference on Machine Learning, 2018 Article de journal

Dans: Journal of Computational Biology, vol. 26, no 6, p. 507–508, 2019, ISSN: 1557-8666.

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Lebatteux, Dylan; Remita, Amine M; Diallo, Abdoulaye Baniré

Toward an Alignment-Free Method for Feature Extraction and Accurate Classification of Viral Sequences. Article de journal

Dans: Journal of computational biology : a journal of computational molecular cell biology, vol. 26, no. 6, p. 519-535, 2019, ISSN: 1557-8666 (Electronic).

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2018

Halioui, Ahmed; Valtchev, Petko; Diallo, Abdoulaye Banire

Bioinformatic Workflow Extraction from Scientific Texts based on Word Sense Disambiguation Article de journal

Dans: IEEE/ACM Transactions on Computational Biology and Bioinformatics, vol. 15, no 6, p. 1979–1990, 2018, ISSN: 1545-5963, 1557-9964, 2374-0043.

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Gao, Xin; Chen, Jake Y.; Zaki, Mohammed J.

Multiscale and Multimodal Analysis for Computational Biology Article de journal

Dans: IEEE/ACM Transactions on Computational Biology and Bioinformatics, vol. 15, no 6, p. 1951–1952, 2018, ISSN: 1545-5963, 1557-9964, 2374-0043.

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Ransy, Doris G.; Lord, Etienne; Caty, Martine; Lapointe, Normand; Boucher, Marc; Diallo, Abdoulaye Baniré; Soudeyns, Hugo

Subtle differences in selective pressures applied on the envelope gene of HIV-1 in pregnant versus non-pregnant women Article de journal

Dans: Infection, Genetics and Evolution, vol. 62, p. 141–150, 2018, ISSN: 15671348.

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Li, Qiang; Byrns, Brook; Badawi, Mohamed A.; Diallo, Abdoulaye Banire; Danyluk, Jean; Sarhan, Fathey; Laudencia-Chingcuanco, Debbie; Zou, Jitao; Fowler, D. Brian

Transcriptomic Insights into Phenological Development and Cold Tolerance of Wheat Grown in the Field Article de journal

Dans: Plant Physiology, vol. 176, no 3, p. 2376–2394, 2018, ISSN: 0032-0889, 1532-2548.

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2017

Remita, Mohamed Amine; Halioui, Ahmed; Diouara, Abou Abdallah Malick; Daigle, Bruno; Kiani, Golrokh; Diallo, Abdoulaye Baniré

A machine learning approach for viral genome classification Article de journal

Dans: BMC Bioinformatics, vol. 18, no 1, p. 208, 2017, ISSN: 1471-2105.

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Halioui, Ahmed; Valtchev, Petko; Diallo, Abdoulaye Baniré

T-GOWler: Discovering Generalized Process Models Within Texts Article de journal

Dans: Journal of Computational Biology, vol. 24, no 8, p. 799–808, 2017, ISSN: 1557-8666.

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Diallo, Abdoulaye Baniré; Nguifo, Engelbert Mephu; Zaki, Mohammed J.

Preface: Selected Papers from the Workshop Bioinformatics and Artificial Intelligence Joined with the International Joint Conference on Artificial Intelligence Article de journal

Dans: Journal of Computational Biology, vol. 24, no 8, p. 733–733, 2017, ISSN: 1557-8666.

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Halioui, Ahmed; Martin, Tomas; Valtchev, Petko; Diallo, Abdoulaye Baniré

Ontology-based workflow pattern mining: application to bioinformatics expertise acquisition Article d’actes

Dans: Proceedings of the Symposium on Applied Computing, p. 824–827, ACM, Marrakech Morocco, 2017, ISBN: 9781450344869.

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86 entrées « 1 de 2 »