Publications

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2017

Leclercq, Mickael; Diallo, Abdoulaye Baniré; Blanchette, Mathieu

Prediction of human miRNA target genes using computationally reconstructed ancestral mammalian sequences Article de journal

Dans: Nucleic Acids Research, vol. 45, no 2, p. 556–566, 2017, ISSN: 0305-1048, 1362-4962.

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2016

Dhifli, Wajdi; Diallo, Abdoulaye Baniré

ProtNN: fast and accurate protein 3D-structure classification in structural and topological space Article de journal

Dans: BioData Mining, vol. 9, no 1, p. 30, 2016, ISSN: 1756-0381.

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Remita, Mohamed Amine; Lord, Etienne; Agharbaoui, Zahra; Leclercq, Mickael; Badawi, Mohamed A.; Sarhan, Fathey; Diallo, Abdoulaye Baniré

A novel comprehensive wheat miRNA database, including related bioinformatics software Article de journal

Dans: Current Plant Biology, vol. 7-8, p. 31–33, 2016, ISSN: 22146628.

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Remita, Mohamed Amine; Halioui, Ahmed; Diouara, Abou Abdallah Malick; Daigle, Bruno; Kiani, Golrokh; Diallo, Abdoulaye Baniré

CASTOR: A machine learning platform for reproducible viral genome classification Divers

2016.

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Halioui, Ahmed; Valtchev, Petko; Diallo, Abdoulaye Baniré

Towards an ontology-based recommender system for relevant bioinformatics workflows Divers

2016.

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Halioui, Ahmed; Valtchev, Petko; Diallo, Abdoulaye Baniré

Ontology-based workflow extraction from texts using word sense disambiguation Divers

2016.

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Dhifli, Wajdi; Diallo, Abdoulaye Baniré

Face Recognition in the Wild Article de journal

Dans: Procedia Computer Science, vol. 96, p. 1571–1580, 2016, ISSN: 18770509.

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2015

Lord, Etienne; Diallo, Abdoulaye Baniré; Makarenkov, Vladimir

Classification of bioinformatics workflows using weighted versions of partitioning and hierarchical clustering algorithms Article de journal

Dans: BMC Bioinformatics, vol. 16, no 1, p. 68, 2015, ISSN: 1471-2105.

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Agharbaoui, Zahra; Leclercq, Mickael; Remita, Mohamed Amine; Badawi, Mohamed A; Lord, Etienne; Houde, Mario; Danyluk, Jean; Diallo, Abdoulaye Baniré; Sarhan, Fathey

An integrative approach to identify hexaploid wheat miRNAome associated with development and tolerance to abiotic stress Article de journal

Dans: BMC Genomics, vol. 16, no 1, p. 339, 2015, ISSN: 1471-2164.

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Halioui, Ahmed; Valtchev, Petko; Diallo, Abdoulaye Banire

Acquisition of Generic Problem Solving Knowledge through Information Extraction and Pattern Mining Article d’actes

Dans: 2015 IEEE 27th International Conference on Tools with Artificial Intelligence (ICTAI), p. 583–590, IEEE, Vietri sul Mare, Italy, 2015, ISBN: 9781509001637.

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Diallo, Abdoulaye Baniré; Agharbaoui, Zahra; Leclercq, Mickael; Remita, Mohamed Amine; Badawi, Mohamed; Houde, Mario; Sarhan, Fathey

Large scale identification of microRNAs associated with stress response and development in wheat Article de journal

Dans: 2015.

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Daigle, Bruno; Makarenkov, Vladimir; Diallo, Abdoulaye Baniré

Effect of Hundreds Sequenced Genomes on the Classification of Human Papillomaviruses Section de livre

Dans: Lausen, Berthold; Krolak-Schwerdt, Sabine; Böhmer, Matthias (Ed.): Data Science, Learning by Latent Structures, and Knowledge Discovery, p. 309–318, Springer Berlin Heidelberg, Berlin, Heidelberg, 2015, ISBN: 9783662449820 9783662449837.

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Dhifli, Wajdi; Diallo, Abdoulaye Baniré

ProtNN: Fast and Accurate Nearest Neighbor Protein Function Prediction based on Graph Embedding in Structural and Topological Space Article de journal

Dans: 2015.

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Abdoulaye, Wajdi Dhifli

PGR: A Novel Graph Repository of Protein 3D-Structures Article de journal

Dans: Journal of Data Mining in Genomics & Proteomics, vol. 06, no 02, 2015, ISSN: 21530602.

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Dhifli, Wajdi; Diallo, Abdoulaye Baniré

Toward an Efficient Multi-class Classification in an Open Universe Article de journal

Dans: 2015.

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2014

Remita, Mohamed Amine; Halioui, Ahmed; Diallo, Abdoulaye Baniré

Supervised Classification of Viral Genomes based on Restriction Site Distribution Article de journal

Dans: 2014.

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2013

Leclercq, Mickael; Diallo, Abdoulaye Banire; Blanchette, Mathieu

Computational prediction of the localization of microRNAs within their pre-miRNA Article de journal

Dans: Nucleic Acids Research, vol. 41, no 15, p. 7200–7211, 2013, ISSN: 1362-4962, 0305-1048.

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2012

Leiser, Willmar L.; Rattunde, H. Frederick W.; Piepho, Hans‐Peter; Weltzien, Eva; Diallo, Abdoulaye; Melchinger, Albrecht E.; Parzies, Heiko K.; Haussmann, Bettina I. G.

Selection Strategy for Sorghum Targeting Phosphorus‐limited Environments in West Africa: Analysis of Multi‐environment Experiments Article de journal

Dans: Crop Science, vol. 52, no 6, p. 2517–2527, 2012, ISSN: 0011-183X, 1435-0653.

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Boc, A.; Diallo, A. B.; Makarenkov, V.

T-REX: a web server for inferring, validating and visualizing phylogenetic trees and networks Article de journal

Dans: Nucleic Acids Research, vol. 40, no W1, p. W573–W579, 2012, ISSN: 0305-1048, 1362-4962.

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Lord, Etienne; Leclercq, Mickael; Boc, Alix; Diallo, Abdoulaye Baniré; Makarenkov, Vladimir

Armadillo 1.1: An Original Workflow Platform for Designing and Conducting Phylogenetic Analysis and Simulations Article de journal

Dans: PLoS ONE, vol. 7, no 1, p. e29903, 2012, ISSN: 1932-6203.

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2011

Badescu, Dunarel; Boc, Alix; Diallo, Abdoulaye Baniré; Makarenkov, Vladimir

Detecting genomic regions associated with a disease using variability functions and Adjusted Rand Index Article de journal

Dans: BMC Bioinformatics, vol. 12, no S9, p. S9, 2011, ISSN: 1471-2105.

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Sadri, Javad; Diallo, Abdoulaye Banire; Blanchette, Mathieu

Predicting site-specific human selective pressure using evolutionary signatures Article de journal

Dans: Bioinformatics, vol. 27, no 13, p. i266–i274, 2011, ISSN: 1367-4811, 1367-4803.

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Horvath, Julie E.; Sheedy, Christina B.; Merrett, Stephanie L.; Diallo, Abdoulaye Banire; Swofford, David L.; Program, Nisc Comparative Sequencing; Green, Eric D.; Willard, Huntington F.

Comparative analysis of the primate X-inactivation center region and reconstruction of the ancestral primate textitXIST locus Article de journal

Dans: Genome Research, vol. 21, no 6, p. 850–862, 2011, ISSN: 1088-9051.

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Diallo, Abdoulaye Baniré; Badescu, Dunarel; Blanchette, Mathieu; Makarenkov, Vladimir

Classification of the Human Papilloma Viruses Section de livre

Dans: Fichet, Bernard; Piccolo, Domenico; Verde, Rosanna; Vichi, Maurizio (Ed.): Classification and Multivariate Analysis for Complex Data Structures, p. 457–464, Springer Berlin Heidelberg, Berlin, Heidelberg, 2011, ISBN: 9783642133114 9783642133121.

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Fichet, Bernard; Piccolo, Domenico; Verde, Rosanna; Vichi, Maurizio (Ed.)

Classification and Multivariate Analysis for Complex Data Structures Ouvrage

Springer Berlin Heidelberg, Berlin, Heidelberg, 2011, ISBN: 9783642133114 9783642133121.

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2010

Diallo, Abdoulaye Banire; Makarenkov, Vladimir; Blanchette, Mathieu

Ancestors 1.0: a web server for ancestral sequence reconstruction Article de journal

Dans: Bioinformatics, vol. 26, no 1, p. 130–131, 2010, ISSN: 1367-4811, 1367-4803.

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Badescu, Dunarel; Diallo, Abdoulaye Baniré; Makarenkov, Vladimir

Identification of Specific Genomic Regions Responsible for the Invasivity of Neisseria Meningitidis Section de livre

Dans: Locarek-Junge, Hermann; Weihs, Claus (Ed.): Classification as a Tool for Research, p. 491–499, Springer Berlin Heidelberg, Berlin, Heidelberg, 2010, ISBN: 9783642107443 9783642107450.

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2009

Diallo, Abdoulaye Baniré; Badescu, Dunarel; Blanchette, Mathieu; Makarenkov, Vladimir

A Whole Genome Study and Identification of Specific Carcinogenic Regions of the Human Papilloma Viruses Article de journal

Dans: Journal of Computational Biology, vol. 16, no 10, p. 1461–1473, 2009, ISSN: 1066-5277, 1557-8666.

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Diallo, Abdoulaye

Inference of insertion and deletion scenarios for ancestral genome reconstruction and phylogenetic analyses: algorithms and biological applications Divers

2009.

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2008

Blanchette, Mathauieu; Diallo, Abdoulaye Baniré; Green, Eric D.; Miller, Webb; Haussler, David

Computational Reconstruction of Ancestral DNA Sequences Section de livre

Dans: Walker, John M.; Murphy, William J. (Ed.): Phylogenomics, vol. 422, p. 171–184, Humana Press, Totowa, NJ, 2008, ISBN: 9781588297648 9781597455817.

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Badescu, Dunarel; Diallo, Abdoulaye Baniré; Blanchette, Mathieu; Makarenkov, Vladimir

An Evolutionary Study of the Human Papillomavirus Genomes Section de livre

Dans: Nelson, Craig E.; Vialette, Stéphane (Ed.): Comparative Genomics, vol. 5267, p. 128–142, Springer Berlin Heidelberg, Berlin, Heidelberg, 2008, ISBN: 9783540879886 9783540879893.

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2007

Diallo, Abdoulaye Banire; Makarenkov, Vladimir; Blanchette, Mathieu

Exact and Heuristic Algorithms for the Indel Maximum Likelihood Problem Article de journal

Dans: Journal of Computational Biology, vol. 14, no 4, p. 446–461, 2007, ISSN: 1066-5277, 1557-8666.

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2006

Diallo, Abdoulaye Baniré; Makarenkov, Vladimir; Blanchette, Mathieu

Finding Maximum Likelihood Indel Scenarios Section de livre

Dans: Hutchison, David; Kanade, Takeo; Kittler, Josef; Kleinberg, Jon M.; Mattern, Friedemann; Mitchell, John C.; Naor, Moni; Nierstrasz, Oscar; Rangan, C. Pandu; Steffen, Bernhard; Sudan, Madhu; Terzopoulos, Demetri; Tygar, Dough; Vardi, Moshe Y.; Weikum, Gerhard; Bourque, Guillaume; El-Mabrouk, Nadia (Ed.): Comparative Genomics, vol. 4205, p. 171–185, Springer Berlin Heidelberg, Berlin, Heidelberg, 2006, ISBN: 9783540445296 9783540445302.

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Diallo, Abdoulaye Baniré; Makarenkov, Vladimir; Blanchette, Mathieu; Lapointe, François-Joseph

A New Efficient Method for Assessing Missing Nucleotides in DNA Sequences in the Framework of a Generic Evolutionary Model Section de livre

Dans: Batagelj, Vladimir; Bock, Hans-Hermann; Ferligoj, Anuška; Žiberna, Aleš (Ed.): Data Science and Classification, p. 333–340, Springer Berlin Heidelberg, 2006, ISBN: 9783540344155.

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2004

Makarenkov, Vladimir; Boc, Alix; Diallo, Abdoulaye Baniré

Determining Horizontal Gene Transfers in Species Classification: Unique Scenario Section de livre

Dans: Banks, David; McMorris, Frederick R.; Arabie, Phipps; Gaul, Wolfgang (Ed.): Classification, Clustering, and Data Mining Applications, p. 439–446, Springer Berlin Heidelberg, Berlin, Heidelberg, 2004, ISBN: 9783540220145 9783642171031.

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85 entrées « 2 de 2 »